Plot an fhx object

Source: R/plotting.R

Plot an fhx object

# S3 method for fhx
plot(...)

Arguments

...

Arguments passed on to plot_demograph().

See also

plot_demograph() is what does the actual plotting.

Examples

data(lgr2)
plot(lgr2)


plot(lgr2, ylabels = FALSE, plot_legend = TRUE)


data(lgr2_meta)
# With color showing species.
plot(lgr2,
  color_group = lgr2_meta$SpeciesID,
  color_id = lgr2_meta$TreeID,
  plot_legend = TRUE
)

# With facets for each species.
plot(lgr2,
  facet_group = lgr2_meta$SpeciesID,
  facet_id = lgr2_meta$TreeID,
  plot_legend = TRUE
)


# Append annotation onto a ggplot object.
require(ggplot2)
#> Loading required package: ggplot2
p <- plot_demograph(lgr2,
  color_group = lgr2_meta$SpeciesID,
  color_id = lgr2_meta$TreeID
)
# Add transparent box as annotation to plot.
p + annotate("rect",
  xmin = 1750, xmax = 1805,
  ymin = 3.5, ymax = 13.5, alpha = 0.2
)